Genome Meta Information: Pseudomonas otitidis MrB4 (GCA_011397855.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_011397855.1 | ||
| HOMD Taxon-ID | HMT-0834 | ||
| Species Name (in use by HOMD) | Pseudomonas otitidis | ||
| Organism Name (as deposited) | HMT-834 Pseudomonas otitidis MrB4 | ||
| Strain or Isolate | MrB4 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Metapseudomonas; s__Metapseudomonas otitidis |
||
| Sequencing Technology | MiSeq; GridION | ||
| Genome Coverage | 75.7 | ||
| Contigs |
|
||
| Total Sequence Length | 6,089,454 (bp) | ||
| GC Percentage | 67.22 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/397/855/GCA_011397855.1_ASM1139785v1 | ||
| CDS | 5480 | ||
| Genes | 5650 | ||
| mRNA | 5650 | ||
| misc RNA | 83 | ||
| rRNA | 12 | ||
| tRNA | 74 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.35 % | ||
| CheckM Completeness | 100 % | ||
| CheckM Contamination | 0.77 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1139785v1 |
| GenBank Assembly Accession | GCA_011397855.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_011397855.1 [NCBI] |
| BioSample | SAMD00204525 [NCBI] |
| BioProject | PRJDB9285 [NCBI] |
| Submitter | National Institute of Advanced Industrial Science and Technology |
| Submission Date | 2020-02-03T13:06:41.640 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 319939 |
| Isolation Source | |
| Geo Location | Japan:shiga, Lake Biwa |
