Genome Meta Information: Rothia dentocariosa TB22-02 (GCA_012641675.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_012641675.1 | ||
| HOMD Taxon-ID | HMT-0587 | ||
| Species Name (in use by HOMD) | Rothia dentocariosa | ||
| Organism Name (as deposited) | HMT-587 Rothia dentocariosa TB22-02 | ||
| Strain or Isolate | TB22-02 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia; s__Rothia dentocariosa |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 33 | ||
| Contigs |
|
||
| Total Sequence Length | 2,597,203 (bp) | ||
| GC Percentage | 53.65 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/641/675/GCA_012641675.1_ASM1264167v1 | ||
| CDS | 2252 | ||
| Genes | 2318 | ||
| mRNA | 2318 | ||
| misc RNA | 12 | ||
| rRNA | 4 | ||
| tRNA | 49 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.7 % | ||
| CheckM Completeness | 95.39 % | ||
| CheckM Contamination | 2.48 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1264167v1 |
| GenBank Assembly Accession | GCA_012641675.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_012641675.1 [NCBI] |
| BioSample | SAMN12537708 [NCBI] |
| BioProject | PRJNA559375 [NCBI] |
| Submitter | Northwestern University |
| Submission Date | 2019-08-08T14:40:17.253 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | VRUP01 |
| NCBI TaxID | 2047 |
| Isolation Source | toothbrush |
| Geo Location | USA: Illinois |
