Genome Meta Information: Lacticaseibacillus paracasei 347-16 (GCA_012955485.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_012955485.1 | ||
| HOMD Taxon-ID | HMT-0716 | ||
| Species Name (in use by HOMD) | Lacticaseibacillus paracasei | ||
| Organism Name (as deposited) | HMT-716 Lacticaseibacillus paracasei 347-16 | ||
| Strain or Isolate | 347-16 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus; s__Lacticaseibacillus paracasei |
||
| Sequencing Technology | Illumina; PacBio | ||
| Genome Coverage | 36 | ||
| Contigs |
|
||
| Total Sequence Length | 3,219,033 (bp) | ||
| GC Percentage | 46.14 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/955/485/GCA_012955485.1_ASM1295548v1 | ||
| CDS | 3084 | ||
| Genes | 3192 | ||
| mRNA | 3192 | ||
| misc RNA | 33 | ||
| rRNA | 15 | ||
| tRNA | 59 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.64 % | ||
| CheckM Completeness | 94.59 % | ||
| CheckM Contamination | 7.56 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1295548v1 |
| GenBank Assembly Accession | GCA_012955485.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_012955485.1 [NCBI] |
| BioSample | SAMN13259076 [NCBI] |
| BioProject | PRJNA588921 [NCBI] |
| Submitter | Stavropol Plague Control Reseach Institute |
| Submission Date | 2019-11-12T04:07:03.150 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1597 |
| Isolation Source | feces |
| Geo Location | Russia: Kislovodsk |
