Genome Meta Information: Mesorhizobium japonicum R7AstarV2 (GCA_012972105.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_012972105.1 | ||
| HOMD Taxon-ID | HMT-0659 | ||
| Species Name (in use by HOMD) | Mesorhizobium japonicum | ||
| Organism Name (as deposited) | HMT-659 Mesorhizobium japonicum R7AstarV2 | ||
| Strain or Isolate | R7AstarV2 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium; s__Mesorhizobium japonicum |
||
| Sequencing Technology | Illumina NextSeq | ||
| Genome Coverage | 48 | ||
| Contigs |
|
||
| Total Sequence Length | 6,530,396 (bp) | ||
| GC Percentage | 62.94 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/972/105/GCA_012972105.1_ASM1297210v1 | ||
| CDS | 6230 | ||
| Genes | 6295 | ||
| mRNA | 0 | ||
| misc RNA | 0 | ||
| rRNA | 6 | ||
| tRNA | 58 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.63 % | ||
| CheckM Completeness | 99.74 % | ||
| CheckM Contamination | 0.28 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1297210v1 |
| GenBank Assembly Accession | GCA_012972105.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_012972105.1 [NCBI] |
| BioSample | SAMN14677114 [NCBI] |
| BioProject | PRJNA627051 [NCBI] |
| Submitter | Curtin University |
| Submission Date | 2020-04-23T08:14:20.213 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 2066070 |
| Isolation Source | NA |
| Geo Location | New Zealand:Dunedin |
