Genome Meta Information: Phocaeicola dorei JR01 (GCA_013009675.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_013009675.1 | ||
| HOMD Taxon-ID | HMT-0975 | ||
| Species Name (in use by HOMD) | Phocaeicola dorei | ||
| Organism Name (as deposited) | HMT-975 Phocaeicola dorei JR01 | ||
| Strain or Isolate | JR01 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola; s__Phocaeicola dorei |
||
| Sequencing Technology | Oxford Nanopore GridION | ||
| Genome Coverage | 96 | ||
| Contigs |
|
||
| Total Sequence Length | 5,511,747 (bp) | ||
| GC Percentage | 42.14 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/009/675/GCA_013009675.1_ASM1300967v1 | ||
| CDS | 4490 | ||
| Genes | 4633 | ||
| mRNA | 4633 | ||
| misc RNA | 42 | ||
| rRNA | 21 | ||
| tRNA | 79 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.37 % | ||
| CheckM Completeness | 100 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1300967v1 |
| GenBank Assembly Accession | GCA_013009675.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_013009675.1 [NCBI] |
| BioSample | SAMN13293896 [NCBI] |
| BioProject | PRJNA589910 [NCBI] |
| Submitter | University of Florida |
| Submission Date | 2019-11-15T20:07:05.433 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 357276 |
| Isolation Source | |
| Geo Location | not applicable |
