Genome Meta Information: Phocaeicola dorei JR04 (GCA_013010255.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_013010255.1 | ||
| HOMD Taxon-ID | HMT-0975 | ||
| Species Name (in use by HOMD) | Phocaeicola dorei | ||
| Organism Name (as deposited) | HMT-975 Phocaeicola dorei JR04 | ||
| Strain or Isolate | JR04 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola; s__Phocaeicola dorei |
||
| Sequencing Technology | Oxford Nanopore GridION | ||
| Genome Coverage | 165 | ||
| Contigs |
|
||
| Total Sequence Length | 5,575,489 (bp) | ||
| GC Percentage | 41.7 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/010/255/GCA_013010255.1_ASM1301025v1 | ||
| CDS | 4613 | ||
| Genes | 4738 | ||
| mRNA | 4738 | ||
| misc RNA | 22 | ||
| rRNA | 21 | ||
| tRNA | 81 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.44 % | ||
| CheckM Completeness | 99.65 % | ||
| CheckM Contamination | 0.35 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1301025v1 |
| GenBank Assembly Accession | GCA_013010255.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_013010255.1 [NCBI] |
| BioSample | SAMN13293899 [NCBI] |
| BioProject | PRJNA589910 [NCBI] |
| Submitter | University of Florida |
| Submission Date | 2019-11-15T20:07:05.493 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 357276 |
| Isolation Source | |
| Geo Location | not applicable |
