Genome Meta Information: Gardnerella leopoldii UMB1350 (GCA_013315125.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_013315125.1 | ||
| HOMD Taxon-ID | HMT-0867 | ||
| Species Name (in use by HOMD) | Gardnerella leopoldii | ||
| Organism Name (as deposited) | HMT-867 Gardnerella leopoldii UMB1350 | ||
| Strain or Isolate | UMB1350 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium; s__Bifidobacterium leopoldii |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 78 | ||
| Contigs |
|
||
| Total Sequence Length | 1,502,805 (bp) | ||
| GC Percentage | 42.12 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/315/125/GCA_013315125.1_ASM1331512v1 | ||
| CDS | 1130 | ||
| Genes | 1192 | ||
| mRNA | 1192 | ||
| misc RNA | 13 | ||
| rRNA | 3 | ||
| tRNA | 45 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 87.55 % | ||
| CheckM Completeness | 94.94 % | ||
| CheckM Contamination | 0.47 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1331512v1 |
| GenBank Assembly Accession | GCA_013315125.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_013315125.1 [NCBI] |
| BioSample | SAMN15064055 [NCBI] |
| BioProject | PRJNA316969 [NCBI] |
| Submitter | Loyola University Chicago |
| Submission Date | 2020-05-30T21:46:03.903 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | JABUHB01 |
| NCBI TaxID | 2702 |
| Isolation Source | urine |
| Geo Location | USA: Maywood, IL |
