Genome Meta Information: Leptotrichia sp. HMT-221 T-B-M_MAG_00008 (GCA_013333235.2)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_013333235.2 | ||
| HOMD Taxon-ID | HMT-0221 | ||
| Species Name (in use by HOMD) | Leptotrichia sp. HMT-221 | ||
| Organism Name (as deposited) | HMT-221 Leptotrichia sp. HMT-221 T-B-M_MAG_00008 | ||
| Strain or Isolate | T-B-M_MAG_00008 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__JABCPH02; s__JABCPH02 sp013333235 |
||
| Sequencing Technology | Illumina NextSeq | ||
| Genome Coverage | 50 | ||
| Contigs |
|
||
| Total Sequence Length | 1,977,728 (bp) | ||
| GC Percentage | 29.04 | ||
| MAG | yes | ||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/333/235/GCA_013333235.2_ASM1333323v2 | ||
| CDS | 1774 | ||
| Genes | 1825 | ||
| mRNA | 1825 | ||
| misc RNA | 18 | ||
| rRNA | 1 | ||
| tRNA | 31 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 93.06 % | ||
| CheckM Contamination | 0.71 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1333323v2 |
| GenBank Assembly Accession | GCA_013333235.2 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_013333235.1 [NCBI] |
| BioSample | SAMN14602671 [NCBI] |
| BioProject | PRJNA625082 [NCBI] |
| Submitter | Marine Biological Laboratory |
| Submission Date | 2020-04-15T15:40:05.410 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JABCPH02 |
| NCBI TaxID | 104608 |
| Isolation Source | tongue scraping |
| Geo Location | USA: Massachusetts |
