Genome Meta Information: Nanogingivalis sp. HMT-401 T-A-F_MAG_00016 (GCA_013333405.2)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_013333405.2 | ||
| HOMD Taxon-ID | HMT-0401 | ||
| Species Name (in use by HOMD) | Nanogingivalis sp. HMT-401 | ||
| Organism Name (as deposited) | HMT-401 Nanogingivalis sp. HMT-401 T-A-F_MAG_00016 | ||
| Strain or Isolate | T-A-F_MAG_00016 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Nanogingivalaceae;g__Nanogingivalis; s__Nanogingivalis sp013333405 |
||
| Sequencing Technology | Illumina NextSeq | ||
| Genome Coverage | 50 | ||
| Contigs |
|
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| Total Sequence Length | 607,771 (bp) | ||
| GC Percentage | 35.8 | ||
| MAG | yes | ||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/333/405/GCA_013333405.2_ASM1333340v2 | ||
| CDS | 608 | ||
| Genes | 640 | ||
| mRNA | 640 | ||
| misc RNA | 2 | ||
| rRNA | 0 | ||
| tRNA | 30 | ||
| tmRNA | 0 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 0 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | No Pangenomes Available. | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1333340v2 |
| GenBank Assembly Accession | GCA_013333405.2 [NCBI] [GTDB] |
| RefSeq Assembly Accession | [NCBI] |
| BioSample | SAMN14602663 [NCBI] |
| BioProject | PRJNA625082 [NCBI] |
| Submitter | Marine Biological Laboratory |
| Submission Date | 2020-04-15T15:40:05.283 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JABCOZ02 |
| NCBI TaxID | 2026720 |
| Isolation Source | tongue scraping |
| Geo Location | USA: Massachusetts |
