Genome Meta Information: Parvisynbacter sp. HMT-348 P-C-F_MAG_00004 (GCA_013333575.2)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_013333575.2 | ||
| HOMD Taxon-ID | HMT-0348 | ||
| Species Name (in use by HOMD) | Parvisynbacter sp. HMT-348 | ||
| Organism Name (as deposited) | HMT-348 Parvisynbacter sp. HMT-348 P-C-F_MAG_00004 | ||
| Strain or Isolate | P-C-F_MAG_00004 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__UBA10027;g__SDRW01; s__SDRW01 sp007845485 |
||
| Sequencing Technology | Illumina NextSeq | ||
| Genome Coverage | 50 | ||
| Contigs |
|
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| Total Sequence Length | 733,643 (bp) | ||
| GC Percentage | 38.47 | ||
| MAG | yes | ||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/333/575/GCA_013333575.2_ASM1333357v2 | ||
| CDS | 723 | ||
| Genes | 760 | ||
| mRNA | 760 | ||
| misc RNA | 2 | ||
| rRNA | 1 | ||
| tRNA | 34 | ||
| tmRNA | 0 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 0 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1333357v2 |
| GenBank Assembly Accession | GCA_013333575.2 [NCBI] [GTDB] |
| RefSeq Assembly Accession | [NCBI] |
| BioSample | SAMN14602652 [NCBI] |
| BioProject | PRJNA625082 [NCBI] |
| Submitter | Marine Biological Laboratory |
| Submission Date | 2020-04-15T15:40:05.110 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JABCOO02 |
| NCBI TaxID | 2026720 |
| Isolation Source | dental plaque |
| Geo Location | USA: Massachusetts |
