Genome Meta Information: Ralstonia pickettii LB_tupeA (GCA_013391365.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_013391365.1 | ||
| HOMD Taxon-ID | HMT-0854 | ||
| Species Name (in use by HOMD) | Ralstonia pickettii | ||
| Organism Name (as deposited) | HMT-854 Ralstonia pickettii LB_tupeA | ||
| Strain or Isolate | LB_tupeA | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ralstonia; s__Ralstonia pickettii_D |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 250 | ||
| Contigs |
|
||
| Total Sequence Length | 5,320,276 (bp) | ||
| GC Percentage | 63.65 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/391/365/GCA_013391365.1_ASM1339136v1 | ||
| CDS | 4929 | ||
| Genes | 5028 | ||
| mRNA | 5028 | ||
| misc RNA | 39 | ||
| rRNA | 6 | ||
| tRNA | 53 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 95.3 % | ||
| CheckM Completeness | 89.48 % | ||
| CheckM Contamination | 5.99 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1339136v1 |
| GenBank Assembly Accession | GCA_013391365.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_013391365.1 [NCBI] |
| BioSample | SAMN15353873 [NCBI] |
| BioProject | PRJNA641460 [NCBI] |
| Submitter | Federal University of Amazonas |
| Submission Date | 2020-06-23T21:18:03.523 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JACAWZ01 |
| NCBI TaxID | 329 |
| Isolation Source | Water Lake |
| Geo Location | Brazil: Amazon State |
