Genome Meta Information: Leptotrichia sp. HMT-223 F0708 (GCA_013394795.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_013394795.1 | ||
| HOMD Taxon-ID | HMT-0223 | ||
| Species Name (in use by HOMD) | Leptotrichia sp. HMT-223 | ||
| Organism Name (as deposited) | HMT-223 Leptotrichia sp. HMT-223 F0708 | ||
| Strain or Isolate | F0708 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia; s__Leptotrichia sp013394795 |
||
| Sequencing Technology | PacBio RS II | ||
| Genome Coverage | 180 | ||
| Contigs |
|
||
| Total Sequence Length | 2,584,194 (bp) | ||
| GC Percentage | 31.38 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/394/795/GCA_013394795.1_ASM1339479v1 | ||
| CDS | 2406 | ||
| Genes | 2484 | ||
| mRNA | 2484 | ||
| misc RNA | 16 | ||
| rRNA | 15 | ||
| tRNA | 46 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 96.38 % | ||
| CheckM Contamination | 0.77 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | No Pangenomes Available. | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1339479v1 |
| GenBank Assembly Accession | GCA_013394795.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_013394795.1 [NCBI] |
| BioSample | SAMN15358583 [NCBI] |
| BioProject | PRJNA282954 [NCBI] |
| Submitter | The Forsyth Institute |
| Submission Date | 2020-06-24T15:38:05.146 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JABXYU01 |
| NCBI TaxID | 712363 |
| Isolation Source | supra-gingival plaque oral cavity |
| Geo Location | USA: Cambridge, Massachusetts |
