Genome Meta Information: Mogibacterium timidum W9173 (GCA_013394805.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_013394805.1 | ||
| HOMD Taxon-ID | HMT-0042 | ||
| Species Name (in use by HOMD) | Mogibacterium timidum | ||
| Organism Name (as deposited) | HMT-042 Mogibacterium timidum W9173 | ||
| Strain or Isolate | W9173 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;g__Mogibacterium; s__Mogibacterium timidum |
||
| Sequencing Technology | PacBio Sequel | ||
| Genome Coverage | 170 | ||
| Contigs |
|
||
| Total Sequence Length | 1,859,163 (bp) | ||
| GC Percentage | 44.21 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/394/805/GCA_013394805.1_ASM1339480v1 | ||
| CDS | 1645 | ||
| Genes | 1717 | ||
| mRNA | 1717 | ||
| misc RNA | 17 | ||
| rRNA | 9 | ||
| tRNA | 45 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.94 % | ||
| CheckM Completeness | 97.95 % | ||
| CheckM Contamination | 0.91 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1339480v1 |
| GenBank Assembly Accession | GCA_013394805.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_013394805.1 [NCBI] |
| BioSample | SAMN15357426 [NCBI] |
| BioProject | PRJNA282954 [NCBI] |
| Submitter | The Forsyth Institute |
| Submission Date | 2020-06-24T11:17:04.783 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JABXYR01 |
| NCBI TaxID | 35519 |
| Isolation Source | carious dentine tooth oral cavity |
| Geo Location | United Kingdom: London |
