Genome Meta Information: Leptotrichia sp. HMT-417 F0703 (GCA_013394865.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_013394865.1 | ||
| HOMD Taxon-ID | HMT-0417 | ||
| Species Name (in use by HOMD) | Leptotrichia sp. HMT-417 | ||
| Organism Name (as deposited) | HMT-417 Leptotrichia sp. HMT-417 F0703 | ||
| Strain or Isolate | F0703 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia; s__Leptotrichia wadei_A |
||
| Sequencing Technology | PacBio RS II | ||
| Genome Coverage | 201 | ||
| Contigs |
|
||
| Total Sequence Length | 2,528,148 (bp) | ||
| GC Percentage | 29.94 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/394/865/GCA_013394865.1_ASM1339486v1 | ||
| CDS | 2241 | ||
| Genes | 2341 | ||
| mRNA | 2341 | ||
| misc RNA | 39 | ||
| rRNA | 15 | ||
| tRNA | 45 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 98.35 % | ||
| CheckM Contamination | 0.82 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1339486v1 |
| GenBank Assembly Accession | GCA_013394865.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_013394865.1 [NCBI] |
| BioSample | SAMN15358621 [NCBI] |
| BioProject | PRJNA282954 [NCBI] |
| Submitter | The Forsyth Institute |
| Submission Date | 2020-06-24T15:55:05.553 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JABXYV01 |
| NCBI TaxID | 712365 |
| Isolation Source | tongue oral cavity |
| Geo Location | USA: Cambridge, Massachusetts |
