Genome Meta Information: Cronobacter sakazakii 5563_17 (GCA_013425995.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_013425995.1 | ||
| HOMD Taxon-ID | HMT-0753 | ||
| Species Name (in use by HOMD) | Cronobacter sakazakii | ||
| Organism Name (as deposited) | HMT-753 Cronobacter sakazakii 5563_17 | ||
| Strain or Isolate | 5563_17 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Cronobacter; s__Cronobacter sakazakii |
||
| Sequencing Technology | Illumina MiSeq; Oxford Nanopore MiniION | ||
| Genome Coverage | 50 | ||
| Contigs |
|
||
| Total Sequence Length | 4,315,383 (bp) | ||
| GC Percentage | 56.96 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/425/995/GCA_013425995.1_ASM1342599v1 | ||
| CDS | 3883 | ||
| Genes | 4094 | ||
| mRNA | 4094 | ||
| misc RNA | 105 | ||
| rRNA | 22 | ||
| tRNA | 83 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.01 % | ||
| CheckM Completeness | 97.91 % | ||
| CheckM Contamination | 0.49 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1342599v1 |
| GenBank Assembly Accession | GCA_013425995.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_013425995.1 [NCBI] |
| BioSample | SAMN15493123 [NCBI] |
| BioProject | PRJNA645121 [NCBI] |
| Submitter | National Medicines Institute |
| Submission Date | 2020-07-09T10:13:11.103 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 28141 |
| Isolation Source | blood |
| Geo Location | Poland:Wrocaw |
