Genome Meta Information: Lactobacillus johnsonii 3DG (GCA_013487865.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_013487865.1 | ||
| HOMD Taxon-ID | HMT-0819 | ||
| Species Name (in use by HOMD) | Lactobacillus johnsonii | ||
| Organism Name (as deposited) | HMT-819 Lactobacillus johnsonii 3DG | ||
| Strain or Isolate | 3DG | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus; s__Lactobacillus johnsonii_A |
||
| Sequencing Technology | PacBio Sequel | ||
| Genome Coverage | 203 | ||
| Contigs |
|
||
| Total Sequence Length | 1,995,616 (bp) | ||
| GC Percentage | 34.41 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/487/865/GCA_013487865.1_ASM1348786v1 | ||
| CDS | 1911 | ||
| Genes | 2045 | ||
| mRNA | 2045 | ||
| misc RNA | 34 | ||
| rRNA | 21 | ||
| tRNA | 78 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 95.73 % | ||
| CheckM Completeness | 93.06 % | ||
| CheckM Contamination | 0.7 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1348786v1 |
| GenBank Assembly Accession | GCA_013487865.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_013487865.1 [NCBI] |
| BioSample | SAMN13624827 [NCBI] |
| BioProject | PRJNA597131 [NCBI] |
| Submitter | North Carolina State University |
| Submission Date | 2019-12-18T15:00:06.413 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 33959 |
| Isolation Source | NCSU Equine Educational Unit |
| Geo Location | USA: North Carolina |
