Genome Meta Information: Limosilactobacillus reuteri CNEI-KCA3 (GCA_013694365.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_013694365.1 | ||
| HOMD Taxon-ID | HMT-0818 | ||
| Species Name (in use by HOMD) | Limosilactobacillus reuteri | ||
| Organism Name (as deposited) | HMT-818 Limosilactobacillus reuteri CNEI-KCA3 | ||
| Strain or Isolate | CNEI-KCA3 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus; s__Limosilactobacillus reuteri_E |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 78 | ||
| Contigs |
|
||
| Total Sequence Length | 2,085,667 (bp) | ||
| GC Percentage | 39.43 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/694/365/GCA_013694365.1_ASM1369436v1 | ||
| CDS | 2404 | ||
| Genes | 2537 | ||
| mRNA | 2537 | ||
| misc RNA | 39 | ||
| rRNA | 16 | ||
| tRNA | 78 | ||
| tmRNA | 0 | ||
| ANI (Average Nucluotide Identity) | 97.04 % | ||
| CheckM Completeness | 98.37 % | ||
| CheckM Contamination | 0.95 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1369436v1 |
| GenBank Assembly Accession | GCA_013694365.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_013694365.1 [NCBI] |
| BioSample | SAMN14639341 [NCBI] |
| BioProject | PRJNA626394 [NCBI] |
| Submitter | Nnamdi Azikiwe University |
| Submission Date | 2020-04-19T00:39:02.846 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1598 |
| Isolation Source | |
| Geo Location | Nigeria |
