Genome Meta Information: Lactiplantibacillus plantarum DSM 20174 (GCA_014131735.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_014131735.1 | ||
| HOMD Taxon-ID | HMT-0861 | ||
| Species Name (in use by HOMD) | Lactiplantibacillus plantarum | ||
| Organism Name (as deposited) | HMT-861 Lactiplantibacillus plantarum DSM 20174 | ||
| Strain or Isolate | DSM 20174 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactiplantibacillus; s__Lactiplantibacillus plantarum |
||
| Sequencing Technology | PacBio; Illumina MiSeq | ||
| Genome Coverage | 146 | ||
| Contigs |
|
||
| Total Sequence Length | 3,250,154 (bp) | ||
| GC Percentage | 44.5 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/131/735/GCA_014131735.1_ASM1413173v1 | ||
| CDS | 3027 | ||
| Genes | 3110 | ||
| mRNA | 0 | ||
| misc RNA | 0 | ||
| rRNA | 16 | ||
| tRNA | 66 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.96 % | ||
| CheckM Completeness | 99.02 % | ||
| CheckM Contamination | 1.39 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1413173v1 |
| GenBank Assembly Accession | GCA_014131735.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_014131735.1 [NCBI] |
| BioSample | SAMN11357169 [NCBI] |
| BioProject | PRJNA531377 [NCBI] |
| Submitter | Helmholtz Centre for Environmental Research - UFZ |
| Submission Date | 2019-04-08T08:00:08.526 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1590 |
| Isolation Source | |
| Geo Location | not determined |
