Genome Meta Information: Micrococcus luteus DSM 21948 (GCA_014138885.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_014138885.1 | ||
| HOMD Taxon-ID | HMT-0087 | ||
| Species Name (in use by HOMD) | Micrococcus luteus | ||
| Organism Name (as deposited) | HMT-087 Micrococcus luteus DSM 21948 | ||
| Strain or Isolate | DSM 21948 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Micrococcus; s__Micrococcus luteus |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 326 | ||
| Contigs |
|
||
| Total Sequence Length | 2,552,467 (bp) | ||
| GC Percentage | 72.9 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/138/885/GCA_014138885.1_ASM1413888v1 | ||
| CDS | 2315 | ||
| Genes | 2387 | ||
| mRNA | 2387 | ||
| misc RNA | 14 | ||
| rRNA | 6 | ||
| tRNA | 51 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.97 % | ||
| CheckM Completeness | 98.7 % | ||
| CheckM Contamination | 0.46 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1413888v1 |
| GenBank Assembly Accession | GCA_014138885.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_014138885.1 [NCBI] |
| BioSample | SAMN14502432 [NCBI] |
| BioProject | PRJNA616582 [NCBI] |
| Submitter | DOE Joint Genome Institute |
| Submission Date | 2020-03-31T12:59:25.410 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JACJIK01 |
| NCBI TaxID | 566027 |
| Isolation Source | missing |
| Geo Location | China: Yunnan Province |
