Genome Meta Information: Escherichia coli WP8-S18-ESBL-07 (GCA_014169775.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_014169775.1 | ||
| HOMD Taxon-ID | HMT-0574 | ||
| Species Name (in use by HOMD) | Escherichia coli | ||
| Organism Name (as deposited) | HMT-574 Escherichia coli WP8-S18-ESBL-07 | ||
| Strain or Isolate | WP8-S18-ESBL-07 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia; s__Escherichia coli |
||
| Sequencing Technology | Sequel; NextSeq 500 | ||
| Genome Coverage | 552 | ||
| Contigs |
|
||
| Total Sequence Length | 5,125,148 (bp) | ||
| GC Percentage | 50.5 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/169/775/GCA_014169775.1_ASM1416977v1 | ||
| CDS | 4775 | ||
| Genes | 5138 | ||
| mRNA | 5138 | ||
| misc RNA | 251 | ||
| rRNA | 22 | ||
| tRNA | 89 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.16 % | ||
| CheckM Completeness | 99.07 % | ||
| CheckM Contamination | 0.36 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1416977v1 |
| GenBank Assembly Accession | GCA_014169775.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_014169775.1 [NCBI] |
| BioSample | SAMD00194629 [NCBI] |
| BioProject | PRJDB6962 [NCBI] |
| Submitter | Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases |
| Submission Date | 2020-07-21T15:07:56.867 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 562 |
| Isolation Source | |
| Geo Location | Japan:Tokyo |
