Genome Meta Information: Selenomonas timonae Marseille-Q3039 (GCA_014250475.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_014250475.1 | ||
| HOMD Taxon-ID | HMT-0138 | ||
| Species Name (in use by HOMD) | Selenomonas timonae | ||
| Organism Name (as deposited) | HMT-138 Selenomonas timonae Marseille-Q3039 | ||
| Strain or Isolate | Marseille-Q3039 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Centipeda; s__Centipeda timonae |
||
| Sequencing Technology | Nanopore; Illumina | ||
| Genome Coverage | 33.891 | ||
| Contigs |
|
||
| Total Sequence Length | 2,351,879 (bp) | ||
| GC Percentage | 57.18 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/250/475/GCA_014250475.1_ASM1425047v1 | ||
| CDS | 2199 | ||
| Genes | 2289 | ||
| mRNA | 2289 | ||
| misc RNA | 18 | ||
| rRNA | 12 | ||
| tRNA | 59 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 99.66 % | ||
| CheckM Contamination | 0.16 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1425047v1 |
| GenBank Assembly Accession | GCA_014250475.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_014250475.1 [NCBI] |
| BioSample | SAMN15581671 [NCBI] |
| BioProject | PRJNA647307 [NCBI] |
| Submitter | IHU - Mediterranee Infection |
| Submission Date | 2020-07-20T09:54:03.460 |
| Assembly Method | |
| Assembly Level | Chromosome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 2754044 |
| Isolation Source | |
| Geo Location | France:Marseille |
