Genome Meta Information: Staphylococcus epidermidis LM087 (GCA_014334295.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_014334295.1 | ||
| HOMD Taxon-ID | HMT-0601 | ||
| Species Name (in use by HOMD) | Staphylococcus epidermidis | ||
| Organism Name (as deposited) | HMT-601 Staphylococcus epidermidis LM087 | ||
| Strain or Isolate | LM087 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus; s__Staphylococcus epidermidis |
||
| Sequencing Technology | PacBio RSII | ||
| Genome Coverage | 200 | ||
| Contigs |
|
||
| Total Sequence Length | 2,494,355 (bp) | ||
| GC Percentage | 32.22 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/334/295/GCA_014334295.1_ASM1433429v1 | ||
| CDS | 2304 | ||
| Genes | 2463 | ||
| mRNA | 2463 | ||
| misc RNA | 79 | ||
| rRNA | 19 | ||
| tRNA | 60 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.6 % | ||
| CheckM Completeness | 99.56 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1433429v1 |
| GenBank Assembly Accession | GCA_014334295.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_014334295.1 [NCBI] |
| BioSample | SAMN04286969 [NCBI] |
| BioProject | PRJNA62349 [NCBI] |
| Submitter | NISC - NIH Intramural Sequencing Center |
| Submission Date | 2015-11-23T10:31:03.010 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1282 |
| Isolation Source | |
| Geo Location | USA |
