Genome Meta Information: Corynebacterium amycolatum LK27 (GCA_014335065.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_014335065.1 | ||
| HOMD Taxon-ID | HMT-0031 | ||
| Species Name (in use by HOMD) | Corynebacterium amycolatum | ||
| Organism Name (as deposited) | HMT-031 Corynebacterium amycolatum LK27 | ||
| Strain or Isolate | LK27 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium; s__Corynebacterium amycolatum |
||
| Sequencing Technology | Illumina NextSeq 500 | ||
| Genome Coverage | 106 | ||
| Contigs |
|
||
| Total Sequence Length | 2,587,291 (bp) | ||
| GC Percentage | 58.66 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/335/065/GCA_014335065.1_LK27 | ||
| CDS | 2247 | ||
| Genes | 2319 | ||
| mRNA | 2319 | ||
| misc RNA | 13 | ||
| rRNA | 3 | ||
| tRNA | 55 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 99.42 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | LK27 |
| GenBank Assembly Accession | GCA_014335065.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_014335065.1 [NCBI] |
| BioSample | SAMN07741519 [NCBI] |
| BioProject | PRJNA395377 [NCBI] |
| Submitter | UPenn |
| Submission Date | 2017-10-05T13:26:17.677 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | PDHA01 |
| NCBI TaxID | 2044580 |
| Isolation Source | diabetic foot ulcer sample 6 |
| Geo Location | USA |
