Genome Meta Information: Porphyromonas pasteri JCM 30531 (GCA_014647755.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_014647755.1 | ||
| HOMD Taxon-ID | HMT-0279 | ||
| Species Name (in use by HOMD) | Porphyromonas pasteri | ||
| Organism Name (as deposited) | HMT-279 Porphyromonas pasteri JCM 30531 | ||
| Strain or Isolate | JCM 30531 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas; s__Porphyromonas pasteri |
||
| Sequencing Technology | Illumina HiSeq X Ten | ||
| Genome Coverage | 231 | ||
| Contigs |
|
||
| Total Sequence Length | 2,166,795 (bp) | ||
| GC Percentage | 55.8 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/647/755/GCA_014647755.1_ASM1464775v1 | ||
| CDS | 1673 | ||
| Genes | 1735 | ||
| mRNA | 1735 | ||
| misc RNA | 8 | ||
| rRNA | 4 | ||
| tRNA | 49 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 99.58 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1464775v1 |
| GenBank Assembly Accession | GCA_014647755.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_014647755.1 [NCBI] |
| BioSample | SAMD00245298 [NCBI] |
| BioProject | PRJDB10510 [NCBI] |
| Submitter | WFCC-MIRCEN World Data Centre for Microorganisms (WDCM) |
| Submission Date | 2020-09-05T01:01:02.103 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | BMPU01 |
| NCBI TaxID | 1583331 |
| Isolation Source | |
| Geo Location | not applicable |
