Genome Meta Information: Sphingomonas glacialis CGMCC 1.8957 (GCA_014653575.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_014653575.1 | ||
| HOMD Taxon-ID | HMT-0003 | ||
| Species Name (in use by HOMD) | Sphingomonas glacialis | ||
| Organism Name (as deposited) | HMT-003 Sphingomonas glacialis CGMCC 1.8957 | ||
| Strain or Isolate | CGMCC 1.8957 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas; s__Sphingomonas glacialis |
||
| Sequencing Technology | Illumina HiSeq X Ten | ||
| Genome Coverage | 97 | ||
| Contigs |
|
||
| Total Sequence Length | 4,470,563 (bp) | ||
| GC Percentage | 65.66 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/653/575/GCA_014653575.1_ASM1465357v1 | ||
| CDS | 4189 | ||
| Genes | 4268 | ||
| mRNA | 4268 | ||
| misc RNA | 25 | ||
| rRNA | 3 | ||
| tRNA | 50 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 98.87 % | ||
| CheckM Contamination | 2.82 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1465357v1 |
| GenBank Assembly Accession | GCA_014653575.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_014653575.1 [NCBI] |
| BioSample | SAMD00245162 [NCBI] |
| BioProject | PRJDB10509 [NCBI] |
| Submitter | WFCC-MIRCEN World Data Centre for Microorganisms (WDCM) |
| Submission Date | 2020-09-05T01:00:57.806 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | BNAQ01 |
| NCBI TaxID | 658225 |
| Isolation Source | |
| Geo Location | not applicable |
