Genome Meta Information: Lactobacillus johnsonii GHZ10a (GCA_014841035.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_014841035.1 | ||
| HOMD Taxon-ID | HMT-0819 | ||
| Species Name (in use by HOMD) | Lactobacillus johnsonii | ||
| Organism Name (as deposited) | HMT-819 Lactobacillus johnsonii GHZ10a | ||
| Strain or Isolate | GHZ10a | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus; s__Lactobacillus sp945980025 |
||
| Sequencing Technology | PacBio Sequel | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 2,015,225 (bp) | ||
| GC Percentage | 35.0 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/841/035/GCA_014841035.1_ASM1484103v1 | ||
| CDS | 1921 | ||
| Genes | 2073 | ||
| mRNA | 2073 | ||
| misc RNA | 47 | ||
| rRNA | 24 | ||
| tRNA | 80 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.67 % | ||
| CheckM Completeness | 96.62 % | ||
| CheckM Contamination | 4.48 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1484103v1 |
| GenBank Assembly Accession | GCA_014841035.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_014841035.1 [NCBI] |
| BioSample | SAMN16131614 [NCBI] |
| BioProject | PRJNA665553 [NCBI] |
| Submitter | Lanzhou Veterinary Research Institute |
| Submission Date | 2020-09-14T22:37:05.843 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 33959 |
| Isolation Source | feces |
| Geo Location | China:qinghai |
