Genome Meta Information: Sneathia vaginalis T3315/96 (GCA_014892235.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_014892235.1 | ||
| HOMD Taxon-ID | HMT-0844 | ||
| Species Name (in use by HOMD) | Sneathia vaginalis | ||
| Organism Name (as deposited) | HMT-844 Sneathia vaginalis T3315/96 | ||
| Strain or Isolate | T3315/96 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Sneathia; s__Sneathia vaginalis |
||
| Sequencing Technology | Illumina NextSeq | ||
| Genome Coverage | 3 | ||
| Contigs |
|
||
| Total Sequence Length | 1,275,728 (bp) | ||
| GC Percentage | 28.43 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/892/235/GCA_014892235.1_ASM1489223v1 | ||
| CDS | 1203 | ||
| Genes | 1255 | ||
| mRNA | 1255 | ||
| misc RNA | 13 | ||
| rRNA | 2 | ||
| tRNA | 36 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 92.01 % | ||
| CheckM Contamination | 0.64 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1489223v1 |
| GenBank Assembly Accession | GCA_014892235.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_014892235.1 [NCBI] |
| BioSample | SAMN16287898 [NCBI] |
| BioProject | PRJNA666307 [NCBI] |
| Submitter | Justus Liebig University Giessen |
| Submission Date | 2020-09-29T06:49:05.606 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | JADBHL01 |
| NCBI TaxID | 2777994 |
| Isolation Source | blood |
| Geo Location | France: Strasbourg |
