Genome Meta Information: Bifidobacterium subtile KCTC 3272 (GCA_014898195.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_014898195.1 | ||
| HOMD Taxon-ID | HMT-0890 | ||
| Species Name (in use by HOMD) | Bifidobacterium subtile | ||
| Organism Name (as deposited) | HMT-890 Bifidobacterium subtile KCTC 3272 | ||
| Strain or Isolate | KCTC 3272 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium; s__Bifidobacterium subtile |
||
| Sequencing Technology | PacBio RSII | ||
| Genome Coverage | 228.49 | ||
| Contigs |
|
||
| Total Sequence Length | 2,822,354 (bp) | ||
| GC Percentage | 60.97 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/898/195/GCA_014898195.1_ASM1489819v1 | ||
| CDS | 2302 | ||
| Genes | 2373 | ||
| mRNA | 2373 | ||
| misc RNA | 17 | ||
| rRNA | 4 | ||
| tRNA | 49 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 95.67 % | ||
| CheckM Contamination | 2.76 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1489819v1 |
| GenBank Assembly Accession | GCA_014898195.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_014898195.1 [NCBI] |
| BioSample | SAMN16365388 [NCBI] |
| BioProject | PRJNA661153 [NCBI] |
| Submitter | Korea University |
| Submission Date | 2020-10-05T03:03:05.063 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 77635 |
| Isolation Source | sewage |
| Geo Location | Missing |
