Genome Meta Information: Haemophilus parainfluenzae M1C111_2 (GCA_014982385.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_014982385.1 | ||
| HOMD Taxon-ID | HMT-0718 | ||
| Species Name (in use by HOMD) | Haemophilus parainfluenzae | ||
| Organism Name (as deposited) | HMT-718 Haemophilus parainfluenzae M1C111_2 | ||
| Strain or Isolate | M1C111_2 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D; s__Haemophilus_D parainfluenzae_AF |
||
| Sequencing Technology | Illumina MiniSeq | ||
| Genome Coverage | 47 | ||
| Contigs |
|
||
| Total Sequence Length | 1,968,590 (bp) | ||
| GC Percentage | 39.58 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/982/385/GCA_014982385.1_ASM1498238v1 | ||
| CDS | 1892 | ||
| Genes | 1972 | ||
| mRNA | 1972 | ||
| misc RNA | 24 | ||
| rRNA | 4 | ||
| tRNA | 51 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 94.42 % | ||
| CheckM Completeness | 99.13 % | ||
| CheckM Contamination | 0.63 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1498238v1 |
| GenBank Assembly Accession | GCA_014982385.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_014982385.1 [NCBI] |
| BioSample | SAMN16409219 [NCBI] |
| BioProject | PRJNA668428 [NCBI] |
| Submitter | Monash University |
| Submission Date | 2020-10-09T22:21:08.273 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JADCLU01 |
| NCBI TaxID | 729 |
| Isolation Source | cough swab |
| Geo Location | Australia: Melbourne |
