Genome Meta Information: Campylobacter concisus H34O-S1 (GCA_015229985.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_015229985.1 | ||
| HOMD Taxon-ID | HMT-0575 | ||
| Species Name (in use by HOMD) | Campylobacter concisus | ||
| Organism Name (as deposited) | HMT-575 Campylobacter concisus clade-575 H34O-S1 | ||
| Strain or Isolate | H34O-S1 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A; s__Campylobacter_A concisus_M |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 219 | ||
| Contigs |
|
||
| Total Sequence Length | 1,803,340 (bp) | ||
| GC Percentage | 37.59 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/229/985/GCA_015229985.1_ASM1522998v1 | ||
| CDS | 1794 | ||
| Genes | 1842 | ||
| mRNA | 0 | ||
| misc RNA | 4 | ||
| rRNA | 2 | ||
| tRNA | 41 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 93.92 % | ||
| CheckM Completeness | 99.01 % | ||
| CheckM Contamination | 0.38 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1522998v1 |
| GenBank Assembly Accession | GCA_015229985.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_015229985.1 [NCBI] |
| BioSample | SAMN14122380 [NCBI] |
| BioProject | PRJNA388128 [NCBI] |
| Submitter | University of New South Wales |
| Submission Date | 2020-02-17T21:40:04.753 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAAKZA01 |
| NCBI TaxID | 199 |
| Isolation Source | saliva |
| Geo Location | Australia |
