Genome Meta Information: Campylobacter concisus H32O-S1 (GCA_015230035.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_015230035.1 | ||
| HOMD Taxon-ID | HMT-0433 | ||
| Species Name (in use by HOMD) | Campylobacter concisus | ||
| Organism Name (as deposited) | HMT-433 Campylobacter concisus clade-433 H32O-S1 | ||
| Strain or Isolate | H32O-S1 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A; s__Campylobacter_A concisus_AB |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 163 | ||
| Contigs |
|
||
| Total Sequence Length | 1,978,079 (bp) | ||
| GC Percentage | 39.31 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/230/035/GCA_015230035.1_ASM1523003v1 | ||
| CDS | 1955 | ||
| Genes | 2001 | ||
| mRNA | 2001 | ||
| misc RNA | 4 | ||
| rRNA | 2 | ||
| tRNA | 39 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 88.56 % | ||
| CheckM Completeness | 99.58 % | ||
| CheckM Contamination | 0.04 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1523003v1 |
| GenBank Assembly Accession | GCA_015230035.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_015230035.1 [NCBI] |
| BioSample | SAMN14122377 [NCBI] |
| BioProject | PRJNA388128 [NCBI] |
| Submitter | University of New South Wales |
| Submission Date | 2020-02-17T21:40:04.700 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAAKZD01 |
| NCBI TaxID | 199 |
| Isolation Source | saliva |
| Geo Location | Australia |
