Genome Meta Information: Nanosynbacter sp. HMT-352 JCVI_1_bin.14 (GCA_015257495.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_015257495.1 | ||
| HOMD Taxon-ID | HMT-0352 | ||
| Species Name (in use by HOMD) | Nanosynbacter sp. HMT-352 | ||
| Organism Name (as deposited) | HMT-352 Nanosynbacter sp. HMT-352 JCVI_1_bin.14 | ||
| Strain or Isolate | JCVI_1_bin.14 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Nanosynbacteraceae;g__Nanosynbacter; s__Nanosynbacter sp900556355 |
||
| Sequencing Technology | Illumina NextSeq | ||
| Genome Coverage | 3.46805 | ||
| Contigs |
|
||
| Total Sequence Length | 727,057 (bp) | ||
| GC Percentage | 43.29 | ||
| MAG | yes | ||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/257/495/GCA_015257495.1_ASM1525749v1 | ||
| CDS | 736 | ||
| Genes | 789 | ||
| mRNA | 789 | ||
| misc RNA | 5 | ||
| rRNA | 4 | ||
| tRNA | 44 | ||
| tmRNA | 0 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 89.66 % | ||
| CheckM Contamination | 0.16 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1525749v1 |
| GenBank Assembly Accession | GCA_015257495.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | [NCBI] |
| BioSample | SAMN14570669 [NCBI] |
| BioProject | PRJNA624185 [NCBI] |
| Submitter | J. Craig Venter Institute |
| Submission Date | 2020-04-09T20:00:07.680 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | JABZKA01 |
| NCBI TaxID | 2725945 |
| Isolation Source | saliva |
| Geo Location | USA: UCLA School of Dentistry |
