Genome Meta Information: Nanogingivalis sp. HMT-399 .JCVI_1_bin.12 (GCA_015257815.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_015257815.1 | ||
| HOMD Taxon-ID | HMT-0399 | ||
| Species Name (in use by HOMD) | Nanogingivalis sp. HMT-399 | ||
| Organism Name (as deposited) | HMT-399 Nanogingivalis sp. HMT-399 .JCVI_1_bin.12 | ||
| Strain or Isolate | .JCVI_1_bin.12 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Nanogingivalaceae;g__Nanogingivalis; s__Nanogingivalis sp015257795 |
||
| Sequencing Technology | Illumina NextSeq | ||
| Genome Coverage | 22.3204 | ||
| Contigs |
|
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| Total Sequence Length | 640,359 (bp) | ||
| GC Percentage | 36.32 | ||
| MAG | yes | ||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/257/815/GCA_015257815.1_ASM1525781v1 | ||
| CDS | 629 | ||
| Genes | 671 | ||
| mRNA | 671 | ||
| misc RNA | 3 | ||
| rRNA | 1 | ||
| tRNA | 38 | ||
| tmRNA | 0 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 0 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1525781v1 |
| GenBank Assembly Accession | GCA_015257815.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | [NCBI] |
| BioSample | SAMN14570654 [NCBI] |
| BioProject | PRJNA624185 [NCBI] |
| Submitter | J. Craig Venter Institute |
| Submission Date | 2020-04-09T20:00:07.433 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | JABZJL01 |
| NCBI TaxID | 2725942 |
| Isolation Source | saliva |
| Geo Location | USA: UCLA School of Dentistry |
