Taxon Table | Genome Table
Genome Meta Information:
Schaalia
lingnae
JCVI_11_bin.15 (GCA_015259385.1)
| HOMD Genome-ID |
GCA_015259385.1
|
| HOMD Taxon-ID |
HMT-0181
|
| Species Name (in use by HOMD) |
Schaalia lingnae
|
| Organism Name (as deposited) |
HMT-181 Schaalia lingnae JCVI_11_bin.15
|
| Strain or Isolate |
JCVI_11_bin.15
|
GTDB (V226)
Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;
s__Pauljensenia sp000308055 |
| Sequencing Technology |
Illumina NextSeq
|
| Genome Coverage |
4.84903
|
| Contigs |
Number of Contigs: 165
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
1,712,975 (bp) |
| GC Percentage |
56.06
|
| MAG |
yes
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/259/385/GCA_015259385.1_ASM1525938v1
|
| CDS |
1500
|
| Genes |
1561
|
| mRNA |
1561
|
| misc RNA |
8
|
| rRNA |
1
|
| tRNA |
52
|
| tmRNA |
0
|
| ANI (Average Nucluotide Identity) |
%
|
| CheckM Completeness |
85.92 %
|
| CheckM Contamination |
2.42 %
|
| CheckM2 Completeness |
0 %
|
| CheckM2 Contamination |
0 %
|
Difference
between
CheckM and CheckM2
Completeness |
200.0 %
|
| CRISPR-cas |
No Available
Data |
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM1525938v1
|
| GenBank Assembly Accession |
GCA_015259385.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
[NCBI]
|
| BioSample |
SAMN14570574
[NCBI]
|
| BioProject |
PRJNA624185
[NCBI]
|
| Submitter |
J. Craig Venter Institute
|
| Submission Date |
2020-04-09T20:00:06.146
|
| Assembly Method |
|
| Assembly Level |
Scaffold
|
| Sequencing Status |
|
| WGS
Project |
JABZGJ01
|
| NCBI TaxID |
29317
|
| Isolation Source |
saliva
|
| Geo Location |
USA: UCLA School of Dentistry
|
