Genome Meta Information: Scardovia wiggsiae JCVI_32_bin.61 (GCA_015259795.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_015259795.1 | ||
| HOMD Taxon-ID | HMT-0195 | ||
| Species Name (in use by HOMD) | Scardovia wiggsiae | ||
| Organism Name (as deposited) | HMT-195 Scardovia wiggsiae JCVI_32_bin.61 | ||
| Strain or Isolate | JCVI_32_bin.61 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Scardovia; s__Scardovia wiggsiae |
||
| Sequencing Technology | Illumina NextSeq | ||
| Genome Coverage | 10.1823 | ||
| Contigs |
|
||
| Total Sequence Length | 1,490,753 (bp) | ||
| GC Percentage | 53.04 | ||
| MAG | yes | ||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/259/795/GCA_015259795.1_ASM1525979v1 | ||
| CDS | 1222 | ||
| Genes | 1274 | ||
| mRNA | 1274 | ||
| misc RNA | 6 | ||
| rRNA | 0 | ||
| tRNA | 45 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.47 % | ||
| CheckM Completeness | 93.3 % | ||
| CheckM Contamination | 0.32 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1525979v1 |
| GenBank Assembly Accession | GCA_015259795.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_015259795.1 [NCBI] |
| BioSample | SAMN14571036 [NCBI] |
| BioProject | PRJNA624185 [NCBI] |
| Submitter | J. Craig Venter Institute |
| Submission Date | 2020-04-09T20:41:09.560 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JABZXZ01 |
| NCBI TaxID | 230143 |
| Isolation Source | saliva |
| Geo Location | USA: UCLA School of Dentistry |
