Genome Meta Information: Rothia mucilaginosa JCVI_35_bin.1 (GCA_015259875.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_015259875.1 | ||
| HOMD Taxon-ID | HMT-0681 | ||
| Species Name (in use by HOMD) | Rothia mucilaginosa | ||
| Organism Name (as deposited) | HMT-681 Rothia mucilaginosa clade-681 JCVI_35_bin.1 | ||
| Strain or Isolate | JCVI_35_bin.1 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia; s__Rothia mucilaginosa |
||
| Sequencing Technology | Illumina NextSeq | ||
| Genome Coverage | 11.9794 | ||
| Contigs |
|
||
| Total Sequence Length | 2,005,514 (bp) | ||
| GC Percentage | 59.79 | ||
| MAG | yes | ||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/259/875/GCA_015259875.1_ASM1525987v1 | ||
| CDS | 1569 | ||
| Genes | 1628 | ||
| mRNA | 1628 | ||
| misc RNA | 13 | ||
| rRNA | 2 | ||
| tRNA | 43 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 86.85 % | ||
| CheckM Contamination | 1.93 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1525987v1 |
| GenBank Assembly Accession | GCA_015259875.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | [NCBI] |
| BioSample | SAMN14571034 [NCBI] |
| BioProject | PRJNA624185 [NCBI] |
| Submitter | J. Craig Venter Institute |
| Submission Date | 2020-04-09T20:41:09.530 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | JABZXX01 |
| NCBI TaxID | 1885016 |
| Isolation Source | saliva |
| Geo Location | USA: UCLA School of Dentistry |
