Genome Meta Information: Prevotella melaninogenica JCVI_37_bin.4 (GCA_015260375.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_015260375.1 | ||
| HOMD Taxon-ID | HMT-0469 | ||
| Species Name (in use by HOMD) | Prevotella melaninogenica | ||
| Organism Name (as deposited) | HMT-469 Prevotella melaninogenica JCVI_37_bin.4 | ||
| Strain or Isolate | JCVI_37_bin.4 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella; s__Prevotella melaninogenica |
||
| Sequencing Technology | Illumina NextSeq | ||
| Genome Coverage | 16.8675 | ||
| Contigs |
|
||
| Total Sequence Length | 3,078,150 (bp) | ||
| GC Percentage | 40.91 | ||
| MAG | yes | ||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/260/375/GCA_015260375.1_ASM1526037v1 | ||
| CDS | 2467 | ||
| Genes | 2516 | ||
| mRNA | 2516 | ||
| misc RNA | 9 | ||
| rRNA | 2 | ||
| tRNA | 37 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 98.43 % | ||
| CheckM Contamination | 0.09 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1526037v1 |
| GenBank Assembly Accession | GCA_015260375.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_015260375.1 [NCBI] |
| BioSample | SAMN14571006 [NCBI] |
| BioProject | PRJNA624185 [NCBI] |
| Submitter | J. Craig Venter Institute |
| Submission Date | 2020-04-09T20:41:09.113 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JABZWV01 |
| NCBI TaxID | 59823 |
| Isolation Source | saliva |
| Geo Location | USA: UCLA School of Dentistry |
