Genome Meta Information: Prevotella pallens JCVI_38_bin.1 (GCA_015261555.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_015261555.1 | ||
| HOMD Taxon-ID | HMT-0714 | ||
| Species Name (in use by HOMD) | Prevotella pallens | ||
| Organism Name (as deposited) | HMT-714 Prevotella pallens JCVI_38_bin.1 | ||
| Strain or Isolate | JCVI_38_bin.1 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella; s__Prevotella pallens |
||
| Sequencing Technology | Illumina NextSeq | ||
| Genome Coverage | 8.52528 | ||
| Contigs |
|
||
| Total Sequence Length | 2,642,913 (bp) | ||
| GC Percentage | 37.2 | ||
| MAG | yes | ||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/261/555/GCA_015261555.1_ASM1526155v1 | ||
| CDS | 2144 | ||
| Genes | 2187 | ||
| mRNA | 2187 | ||
| misc RNA | 8 | ||
| rRNA | 0 | ||
| tRNA | 34 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.32 % | ||
| CheckM Completeness | 98.46 % | ||
| CheckM Contamination | 1.54 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1526155v1 |
| GenBank Assembly Accession | GCA_015261555.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_015261555.1 [NCBI] |
| BioSample | SAMN14570945 [NCBI] |
| BioProject | PRJNA624185 [NCBI] |
| Submitter | J. Craig Venter Institute |
| Submission Date | 2020-04-09T20:41:08.180 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JABZUM01 |
| NCBI TaxID | 60133 |
| Isolation Source | saliva |
| Geo Location | USA: UCLA School of Dentistry |
