Taxon Table | Genome Table
Genome Meta Information:
Prevotella
pallens
JCVI_25_bin.14 (GCA_015261725.1)
| HOMD Genome-ID |
GCA_015261725.1
|
| HOMD Taxon-ID |
HMT-0714
|
| Species Name (in use by HOMD) |
Prevotella pallens
|
| Organism Name (as deposited) |
HMT-714 Prevotella pallens JCVI_25_bin.14
|
| Strain or Isolate |
JCVI_25_bin.14
|
GTDB (V226)
Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;
s__Prevotella pallens |
| Sequencing Technology |
Illumina NextSeq
|
| Genome Coverage |
3.51504
|
| Contigs |
Number of Contigs: 142
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
2,519,827 (bp) |
| GC Percentage |
37.01
|
| MAG |
yes
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/261/725/GCA_015261725.1_ASM1526172v1
|
| CDS |
2014
|
| Genes |
2054
|
| mRNA |
2054
|
| misc RNA |
7
|
| rRNA |
0
|
| tRNA |
32
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
98.38 %
|
| CheckM Completeness |
97.08 %
|
| CheckM Contamination |
0.36 %
|
| CheckM2 Completeness |
0 %
|
| CheckM2 Contamination |
0 %
|
Difference
between
CheckM and CheckM2
Completeness |
200.0 %
|
| CRISPR-cas |
1 Contig
[View]
[HOMD FTP]
|
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM1526172v1
|
| GenBank Assembly Accession |
GCA_015261725.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_015261725.1
[NCBI]
|
| BioSample |
SAMN14570936
[NCBI]
|
| BioProject |
PRJNA624185
[NCBI]
|
| Submitter |
J. Craig Venter Institute
|
| Submission Date |
2020-04-09T20:41:08.043
|
| Assembly Method |
|
| Assembly Level |
Contig
|
| Sequencing Status |
|
| WGS
Project |
JABZUD01
|
| NCBI TaxID |
60133
|
| Isolation Source |
saliva
|
| Geo Location |
USA: UCLA School of Dentistry
|
