Genome Meta Information: Porphyromonas pasteri JCVI_1_bin.6 (GCA_015262735.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_015262735.1 | ||
| HOMD Taxon-ID | HMT-0279 | ||
| Species Name (in use by HOMD) | Porphyromonas pasteri | ||
| Organism Name (as deposited) | HMT-279 Porphyromonas pasteri JCVI_1_bin.6 | ||
| Strain or Isolate | JCVI_1_bin.6 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas; s__Porphyromonas pasteri |
||
| Sequencing Technology | Illumina NextSeq | ||
| Genome Coverage | 4.18842 | ||
| Contigs |
|
||
| Total Sequence Length | 2,204,561 (bp) | ||
| GC Percentage | 55.73 | ||
| MAG | yes | ||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/262/735/GCA_015262735.1_ASM1526273v1 | ||
| CDS | 1698 | ||
| Genes | 1754 | ||
| mRNA | 1754 | ||
| misc RNA | 7 | ||
| rRNA | 2 | ||
| tRNA | 46 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 99.29 % | ||
| CheckM Contamination | 0.07 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1526273v1 |
| GenBank Assembly Accession | GCA_015262735.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_015262735.1 [NCBI] |
| BioSample | SAMN14570886 [NCBI] |
| BioProject | PRJNA624185 [NCBI] |
| Submitter | J. Craig Venter Institute |
| Submission Date | 2020-04-09T20:41:07.286 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | JABZSF01 |
| NCBI TaxID | 1924944 |
| Isolation Source | saliva |
| Geo Location | USA: UCLA School of Dentistry |
