Genome Meta Information: Porphyromonas pasteri JCVI_41_bin.6 (GCA_015262915.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_015262915.1 | ||
| HOMD Taxon-ID | HMT-0279 | ||
| Species Name (in use by HOMD) | Porphyromonas pasteri | ||
| Organism Name (as deposited) | HMT-279 Porphyromonas pasteri JCVI_41_bin.6 | ||
| Strain or Isolate | JCVI_41_bin.6 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas; s__Porphyromonas pasteri |
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| Sequencing Technology | Illumina NextSeq | ||
| Genome Coverage | 12.2283 | ||
| Contigs |
|
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| Total Sequence Length | 2,367,683 (bp) | ||
| GC Percentage | 55.66 | ||
| MAG | yes | ||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/262/915/GCA_015262915.1_ASM1526291v1 | ||
| CDS | 1843 | ||
| Genes | 1910 | ||
| mRNA | 1910 | ||
| misc RNA | 7 | ||
| rRNA | 10 | ||
| tRNA | 49 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 0 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1526291v1 |
| GenBank Assembly Accession | GCA_015262915.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | [NCBI] |
| BioSample | SAMN14570876 [NCBI] |
| BioProject | PRJNA624185 [NCBI] |
| Submitter | J. Craig Venter Institute |
| Submission Date | 2020-04-09T20:41:07.130 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | JABZRV01 |
| NCBI TaxID | 2049046 |
| Isolation Source | saliva |
| Geo Location | USA: UCLA School of Dentistry |
