Taxon Table | Genome Table
Genome Meta Information:
Porphyromonas
pasteri
JCVI_38_bin.12 (GCA_015262975.1)
| HOMD Genome-ID |
GCA_015262975.1
|
| HOMD Taxon-ID |
HMT-0279
|
| Species Name (in use by HOMD) |
Porphyromonas pasteri
|
| Organism Name (as deposited) |
HMT-279 Porphyromonas pasteri JCVI_38_bin.12
|
| Strain or Isolate |
JCVI_38_bin.12
|
GTDB (V226)
Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;
s__Porphyromonas pasteri |
| Sequencing Technology |
Illumina NextSeq
|
| Genome Coverage |
13.9105
|
| Contigs |
Number of Contigs: 173
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
2,253,703 (bp) |
| GC Percentage |
55.82
|
| MAG |
yes
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/262/975/GCA_015262975.1_ASM1526297v1
|
| CDS |
1751
|
| Genes |
1806
|
| mRNA |
1806
|
| misc RNA |
7
|
| rRNA |
1
|
| tRNA |
46
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
%
|
| CheckM Completeness |
0 %
|
| CheckM Contamination |
0 %
|
| CheckM2 Completeness |
0 %
|
| CheckM2 Contamination |
0 %
|
| CRISPR-cas |
1 Contig
[View]
[HOMD FTP]
|
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM1526297v1
|
| GenBank Assembly Accession |
GCA_015262975.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
[NCBI]
|
| BioSample |
SAMN14570875
[NCBI]
|
| BioProject |
PRJNA624185
[NCBI]
|
| Submitter |
J. Craig Venter Institute
|
| Submission Date |
2020-04-09T20:41:07.116
|
| Assembly Method |
|
| Assembly Level |
Scaffold
|
| Sequencing Status |
|
| WGS
Project |
JABZRU01
|
| NCBI TaxID |
2049046
|
| Isolation Source |
saliva
|
| Geo Location |
USA: UCLA School of Dentistry
|
