Genome Meta Information: Parvimonas sp. HMT-110 JCVI_24_bin.16 (GCA_015263255.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_015263255.1 | ||
| HOMD Taxon-ID | HMT-0110 | ||
| Species Name (in use by HOMD) | Parvimonas sp. HMT-110 | ||
| Organism Name (as deposited) | HMT-110 Parvimonas sp. HMT-110 JCVI_24_bin.16 | ||
| Strain or Isolate | JCVI_24_bin.16 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Parvimonas; s__Parvimonas sp000214475 |
||
| Sequencing Technology | Illumina NextSeq | ||
| Genome Coverage | 12.3788 | ||
| Contigs |
|
||
| Total Sequence Length | 1,555,998 (bp) | ||
| GC Percentage | 28.11 | ||
| MAG | yes | ||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/263/255/GCA_015263255.1_ASM1526325v1 | ||
| CDS | 1459 | ||
| Genes | 1541 | ||
| mRNA | 1541 | ||
| misc RNA | 27 | ||
| rRNA | 5 | ||
| tRNA | 49 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 97.41 % | ||
| CheckM Contamination | 0.31 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1526325v1 |
| GenBank Assembly Accession | GCA_015263255.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_015263255.1 [NCBI] |
| BioSample | SAMN14570861 [NCBI] |
| BioProject | PRJNA624185 [NCBI] |
| Submitter | J. Craig Venter Institute |
| Submission Date | 2020-04-09T20:41:06.896 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | JABZRG01 |
| NCBI TaxID | 1944660 |
| Isolation Source | saliva |
| Geo Location | USA: UCLA School of Dentistry |
