Genome Meta Information: Parvimonas micra JCVI_23_bin.11 (GCA_015263295.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_015263295.1 | ||
| HOMD Taxon-ID | HMT-0111 | ||
| Species Name (in use by HOMD) | Parvimonas micra | ||
| Organism Name (as deposited) | HMT-111 Parvimonas micra JCVI_23_bin.11 | ||
| Strain or Isolate | JCVI_23_bin.11 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Parvimonas; s__Parvimonas micra |
||
| Sequencing Technology | Illumina NextSeq | ||
| Genome Coverage | 5.39008 | ||
| Contigs |
|
||
| Total Sequence Length | 1,774,636 (bp) | ||
| GC Percentage | 28.33 | ||
| MAG | yes | ||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/263/295/GCA_015263295.1_ASM1526329v1 | ||
| CDS | 1635 | ||
| Genes | 1709 | ||
| mRNA | 1709 | ||
| misc RNA | 31 | ||
| rRNA | 0 | ||
| tRNA | 41 | ||
| tmRNA | 2 | ||
| ANI (Average Nucluotide Identity) | 97.69 % | ||
| CheckM Completeness | 98.28 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1526329v1 |
| GenBank Assembly Accession | GCA_015263295.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_015263295.1 [NCBI] |
| BioSample | SAMN14570859 [NCBI] |
| BioProject | PRJNA624185 [NCBI] |
| Submitter | J. Craig Venter Institute |
| Submission Date | 2020-04-09T20:41:06.866 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JABZRE01 |
| NCBI TaxID | 33033 |
| Isolation Source | saliva |
| Geo Location | USA: UCLA School of Dentistry |
