Genome Meta Information: Neisseria perflava JCVI_39_bin.16 (GCA_015263375.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_015263375.1 | ||
| HOMD Taxon-ID | HMT-0101 | ||
| Species Name (in use by HOMD) | Neisseria perflava | ||
| Organism Name (as deposited) | HMT-101 Neisseria perflava JCVI_39_bin.16 | ||
| Strain or Isolate | JCVI_39_bin.16 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria; s__Neisseria perflava_A |
||
| Sequencing Technology | Illumina NextSeq | ||
| Genome Coverage | 12.8666 | ||
| Contigs |
|
||
| Total Sequence Length | 2,148,734 (bp) | ||
| GC Percentage | 49.15 | ||
| MAG | yes | ||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/263/375/GCA_015263375.1_ASM1526337v1 | ||
| CDS | 2066 | ||
| Genes | 2133 | ||
| mRNA | 2133 | ||
| misc RNA | 20 | ||
| rRNA | 0 | ||
| tRNA | 46 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 96.88 % | ||
| CheckM Contamination | 0.2 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1526337v1 |
| GenBank Assembly Accession | GCA_015263375.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_015263375.1 [NCBI] |
| BioSample | SAMN14570852 [NCBI] |
| BioProject | PRJNA624185 [NCBI] |
| Submitter | J. Craig Venter Institute |
| Submission Date | 2020-04-09T20:41:06.760 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | JABZQX01 |
| NCBI TaxID | 192066 |
| Isolation Source | saliva |
| Geo Location | USA: UCLA School of Dentistry |
