Taxon Table | Genome Table
Genome Meta Information:
Neisseria
flava
JCVI_32_bin.62 (GCA_015263535.1)
| HOMD Genome-ID |
GCA_015263535.1
|
| HOMD Taxon-ID |
HMT-0609
|
| Species Name (in use by HOMD) |
Neisseria flava
|
| Organism Name (as deposited) |
HMT-609 Neisseria flava JCVI_32_bin.62
|
| Strain or Isolate |
JCVI_32_bin.62
|
GTDB (V226)
Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria;
s__Neisseria flava |
| Sequencing Technology |
Illumina NextSeq
|
| Genome Coverage |
9.34773
|
| Contigs |
Number of Contigs: 198
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
2,189,526 (bp) |
| GC Percentage |
51.2
|
| MAG |
yes
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/263/535/GCA_015263535.1_ASM1526353v1
|
| CDS |
2049
|
| Genes |
2126
|
| mRNA |
2126
|
| misc RNA |
25
|
| rRNA |
0
|
| tRNA |
51
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
94.48 %
|
| CheckM Completeness |
88.83 %
|
| CheckM Contamination |
2.27 %
|
| CheckM2 Completeness |
0 %
|
| CheckM2 Contamination |
0 %
|
Difference
between
CheckM and CheckM2
Completeness |
200.0 %
|
| CRISPR-cas |
Ambiguous
[HOMD FTP]
|
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM1526353v1
|
| GenBank Assembly Accession |
GCA_015263535.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
[NCBI]
|
| BioSample |
SAMN14570845
[NCBI]
|
| BioProject |
PRJNA624185
[NCBI]
|
| Submitter |
J. Craig Venter Institute
|
| Submission Date |
2020-04-09T20:41:06.653
|
| Assembly Method |
|
| Assembly Level |
Scaffold
|
| Sequencing Status |
|
| WGS
Project |
JABZQQ01
|
| NCBI TaxID |
490
|
| Isolation Source |
saliva
|
| Geo Location |
USA: UCLA School of Dentistry
|
