Genome Meta Information: Staphylococcus capitis R6012 (GCA_015273975.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_015273975.1 | ||
| HOMD Taxon-ID | HMT-0116 | ||
| Species Name (in use by HOMD) | Staphylococcus capitis | ||
| Organism Name (as deposited) | HMT-116 Staphylococcus capitis R6012 | ||
| Strain or Isolate | R6012 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus; s__Staphylococcus capitis |
||
| Sequencing Technology | Illumina NextSeq | ||
| Genome Coverage | 40 | ||
| Contigs |
|
||
| Total Sequence Length | 2,559,829 (bp) | ||
| GC Percentage | 32.76 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/273/975/GCA_015273975.1_ASM1527397v1 | ||
| CDS | 2443 | ||
| Genes | 2560 | ||
| mRNA | 2560 | ||
| misc RNA | 50 | ||
| rRNA | 8 | ||
| tRNA | 58 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.78 % | ||
| CheckM Completeness | 98.76 % | ||
| CheckM Contamination | 0.45 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1527397v1 |
| GenBank Assembly Accession | GCA_015273975.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_015273975.1 [NCBI] |
| BioSample | SAMN15665267 [NCBI] |
| BioProject | PRJNA649052 [NCBI] |
| Submitter | University of Queensland |
| Submission Date | 2020-07-29T03:02:05.997 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JACGQE01 |
| NCBI TaxID | 29388 |
| Isolation Source | skin swab1482 from squamous cell carcinomas patient MST013 |
| Geo Location | Australia: Brisbane |
