Genome Meta Information: Staphylococcus capitis R5944 (GCA_015274025.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_015274025.1 | ||
| HOMD Taxon-ID | HMT-0116 | ||
| Species Name (in use by HOMD) | Staphylococcus capitis | ||
| Organism Name (as deposited) | HMT-116 Staphylococcus capitis R5944 | ||
| Strain or Isolate | R5944 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus; s__Staphylococcus capitis |
||
| Sequencing Technology | Illumina NextSeq | ||
| Genome Coverage | 40 | ||
| Contigs |
|
||
| Total Sequence Length | 2,620,474 (bp) | ||
| GC Percentage | 32.67 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/274/025/GCA_015274025.1_ASM1527402v1 | ||
| CDS | 2503 | ||
| Genes | 2618 | ||
| mRNA | 2618 | ||
| misc RNA | 48 | ||
| rRNA | 8 | ||
| tRNA | 58 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.97 % | ||
| CheckM Completeness | 99.43 % | ||
| CheckM Contamination | 0.36 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1527402v1 |
| GenBank Assembly Accession | GCA_015274025.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_015274025.1 [NCBI] |
| BioSample | SAMN15665263 [NCBI] |
| BioProject | PRJNA649052 [NCBI] |
| Submitter | University of Queensland |
| Submission Date | 2020-07-29T03:02:05.930 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JACGQA01 |
| NCBI TaxID | 29388 |
| Isolation Source | skin swab1472 from squamous cell carcinomas patient MST012 |
| Geo Location | Australia: Brisbane |
