Genome Meta Information: Schlegelella thermodepolymerans DSM 15344 (GCA_015476235.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_015476235.1 | ||
| HOMD Taxon-ID | HMT-0024 | ||
| Species Name (in use by HOMD) | Schlegelella thermodepolymerans | ||
| Organism Name (as deposited) | HMT-024 Schlegelella thermodepolymerans DSM 15344 | ||
| Strain or Isolate | DSM 15344 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Caldimonas; s__Caldimonas thermodepolymerans |
||
| Sequencing Technology | Oxford Nanopore MinION; Illumina MiSeq | ||
| Genome Coverage | 5500 | ||
| Contigs |
|
||
| Total Sequence Length | 3,858,501 (bp) | ||
| GC Percentage | 70.28 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/476/235/GCA_015476235.1_ASM1547623v1 | ||
| CDS | 3593 | ||
| Genes | 3673 | ||
| mRNA | 3673 | ||
| misc RNA | 16 | ||
| rRNA | 6 | ||
| tRNA | 57 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 99.85 % | ||
| CheckM Contamination | 0.46 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1547623v1 |
| GenBank Assembly Accession | GCA_015476235.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_015476235.1 [NCBI] |
| BioSample | SAMN16675030 [NCBI] |
| BioProject | PRJNA674774 [NCBI] |
| Submitter | Brno University of Technology |
| Submission Date | 2020-11-05T08:39:07.956 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 215580 |
| Isolation Source | cultured in Erlenmeyer flask |
| Geo Location | Czech Republic |
