Genome Meta Information: Staphylococcus capitis C34 (GCA_015645205.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_015645205.1 | ||
| HOMD Taxon-ID | HMT-0116 | ||
| Species Name (in use by HOMD) | Staphylococcus capitis | ||
| Organism Name (as deposited) | HMT-116 Staphylococcus capitis C34 | ||
| Strain or Isolate | C34 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus; s__Staphylococcus capitis |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 2,558,708 (bp) | ||
| GC Percentage | 32.84 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/645/205/GCA_015645205.1_ASM1564520v1 | ||
| CDS | 2444 | ||
| Genes | 2568 | ||
| mRNA | 2568 | ||
| misc RNA | 51 | ||
| rRNA | 10 | ||
| tRNA | 62 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.87 % | ||
| CheckM Completeness | 99.51 % | ||
| CheckM Contamination | 0.36 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1564520v1 |
| GenBank Assembly Accession | GCA_015645205.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_015645205.1 [NCBI] |
| BioSample | SAMN16679764 [NCBI] |
| BioProject | PRJNA674911 [NCBI] |
| Submitter | Zhejiang University School of Medicine |
| Submission Date | 2020-11-05T20:54:05.276 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JADOYF01 |
| NCBI TaxID | 29388 |
| Isolation Source | blood |
| Geo Location | Taiwan |
